Installation

Dependencies

LUNA is compatible with Python 3.x. It additionally has the following dependencies:

• Biopython == 1.72

• colorlog

• Matplotlib

• mmh3 >= 2.5.1

• NetworkX

• NumPy

• Open Babel

• pandas

• Pymol

• RDKit

• SciPy

• Seaborn

• xopen

Installation

The following installation approaches are listed in order of recommendation. These approaches require a prior installation of the dependencies listed above.

Option 1: Pip

To install with pip, run:

pip install -U luna

We recommend using a virtual environment for this.

Option 2: Build from source

1. Download LUNA repository to your machine.

   • Clone it to your machine with

     $ git clone https://github.com/keiserlab/LUNA.git
     

   • OR download an archive by navigating to the repository and clicking “Download ZIP”. Extract the archive.

2. Install with

   $ cd LUNA
   $ python setup.py build
   $ python setup.py install
   

We recommend using a virtual environment for this.